IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.

Sep 16, 2024 · It will install IMOD in C:\Program Files\IMOD, define the environment variables IMOD_DIR, IMOD_PLUGIN_DIR, and HOME, and place both IMOD and the version of Python that it …

IMOD 4.11 provides new flexibility with regard to the parameters of a tilt series. Originally, the algorithm and parameters in Beadtrack were tuned to operate well over a certain range of bead sizes and with …

Dec 11, 2020 · To use IMOD fully without Cygwin on Windows, you need to install Python and a module called psutil built for the same version of Python. You do not need these packages if you are using …

For instructions on unpacking, see the latest IMOD User's Guide. For instructions on installing and setting up the IMOD environment see the IMOD User's Guide (html/guide.html) in the package.

If you do not have IMOD 5.1 installed, you should either upgrade to it, or enter imodhelp in the terminal and select the Etomo Tutorial that comes in your installed version.

In IMOD models, integer Z values are defined as being located in the middle of a pixel in Z, which makes model coordinates range from -0.5 to NZ - 0.5 for a volume of NZ slices. Use this option if the point …

This section lists Fortran image processing programs for MRC image files, Fortran programs that work with IMOD models, and scripts that run these programs. Some of the programs prompt users for …

Reconstructing a Cryo-Sample with Patch Tracking (IMOD 5.1) University of Colorado, Boulder

Etomo provides a graphical user interface (GUI) to the IMOD Tomography package. The general user interface design idea on which Etomo is built is to present a separate panel for each distinct step in …